Index

A

all_component_sets() (pysb.core.Model method) as_complex_pattern() (in module pysb.core)

as_reaction_pattern() (in module pysb.core) assemble_pore_sequential() (in module pysb.macros)

B

bind() (in module pysb.macros)

bind_table() (in module pysb.macros)

C

catalyze() (in module pysb.macros) catalyze_one_step() (in module pysb.macros) catalyze_one_step_reversible() (in module pysb.macros) catalyze_state() (in module pysb.macros) catalyze_table() (in module pysb.macros) Compartment (class in pysb.core)

ComplexPattern (class in pysb.core) Component (class in pysb.core) ComponentDuplicateNameError ComponentSet (class in pysb.core) copy() (pysb.core.ComplexPattern method)

D

degrade() (in module pysb.macros)

E

enable_synth_deg() (pysb.core.Model method) equilibrate() (in module pysb.macros)

extract_site_conditions() (in module pysb.core)

H

has_synth_deg() (pysb.core.Model method)

I

InvalidComponentNameError is_concrete() (pysb.core.ComplexPattern method) (pysb.core.MonomerPattern method)

is_equivalent_to() (pysb.core.ComplexPattern method) is_site_concrete() (pysb.core.MonomerPattern method)

M

Model (class in pysb.core) ModelExistsWarning Monomer (class in pysb.core)

MonomerAny (class in pysb.core) MonomerPattern (class in pysb.core) MonomerWild (class in pysb.core)

O

Observable (class in pysb.core)

P

Parameter (class in pysb.core) parameters_compartments() (pysb.core.Model method) parameters_initial_conditions() (pysb.core.Model method) parameters_rules() (pysb.core.Model method)

parameters_unused() (pysb.core.Model method) pore_transport() (in module pysb.macros) pysb.core (module) pysb.macros (module)

R

ReactionPattern (class in pysb.core) rename() (pysb.core.ComponentSet method)

reset_equations() (pysb.core.Model method) RuleExpression (class in pysb.core)

S

SymbolExistsWarning synthesize() (in module pysb.macros)

synthesize_degrade_table() (in module pysb.macros)